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en:alpha_beta_diversity [2016/06/26 00:15] David Zelený |
en:alpha_beta_diversity [2016/06/26 01:20] David Zelený [Diversity analysis] |
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====== Diversity analysis ====== | ====== Diversity analysis ====== | ||
FIXME | FIXME | ||
+ | |||
+ | Plan: | ||
+ | Divide the chapter into alpha+gamma diversity section and beta diversity section. One option - use Jurasinsky et al 2009 schema and talk about inventory, differentiation and proportional diversity (inventory = alpha and gamma, differentiation = based on dissimilarity measures, incl. variation within compositional matrix and length of DCA axis; proportional - gamma vs alpha, additive vs multiplicative, | ||
+ | Other option is to divide the whole topic into several chapters: | ||
+ | - alpha diversity (inventory diversity) | ||
+ | - includes species richness, Shannon entropy, Simpson concentration index, Hill's numbers, effective number of species | ||
+ | - rarefaction and accumulation curves, estimates of unseen species | ||
+ | - beta diversity | ||
+ | - differentiation diversity - Legendre' | ||
+ | - proportional diversity - Whittaker' | ||
===== Rarefaction and accumulation curves ===== | ===== Rarefaction and accumulation curves ===== |