This is a list of references for papers and books used or referred to within this website. Some references contain DOI and, if available in the public domain, also the link to the pdf or HTML version.
Anderson, M.J., Crist, T.O., Chase, J.M., Vellend, M., Inouye, B.D., Freestone, A.L., Sanders, N.J., Cornell, H.V., Comita, L.S., Davies, K.F., Harrison, S.P., Kraft, N.J.B., Stegen, J.C. & Swenson, N.G. 2011. Navigating the multiple meanings of β diversity: a roadmap for the practising ecologist. Ecology Letters 14: 19-28. https://doi.org/10.1111/j.1461-0248.2010.01585.xpdf
Blanchet, F.G., Legendre, P. & Borcard, D. 2008. Forward selection of explanatory variables. Ecology 89: 2623-2632. pdf
Borcard, D., Gillet, F. & Legendre, P. 2011. Numerical Ecology with R. Springer.
Borcard, D., Gillet, F. & Legendre, P. 2018. Numerical Ecology with R. Second edition. Springer. Supplementary material
Chao, A. & Jost, L. 2012. Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size. Ecology 93: 2533–2547.
Chao, A., Chiu, C.-H. & Jost, L. 2014. Unifying species diversity, phylogenetic diversity, functional diversity, and related similarity and differentiation measures through Hill numbers. Annual Review of Ecology, Evolution, and Systematics 45:297–324.
Chao, A., Gotelli, N.J., Hsieh, T.C., Sander, E.L., Ma, K.H., Colwell, R.K. & Ellison, A.M. 2014. Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecological Monographs 84: 45–67.
Dray, S., Choler, P., Dolédec, S., Peres-Neto, P., Thuiller, W., Pavoine, S., ter Braak, C.J.F. (2014): Combining the fourth-corner and the RLQ methods for assessing trait responses to environmental variation. Ecology 95:14-21. https://doi.org/10.1890/13-0196.1
Gauch, H.G.Jr. 1982. Multivariate Analysis in Community Ecology. Cambridge University Press.
Goodall, D. 1954. Objective methods for the classification of vegetation. III. An essay in the use of factor analysis. Australian Journal of Botany 2:304-324.
Gotelli, N.J. & Ellison, A.M. 2013. A Primer of Ecological Statistics. Second Edition. Sinauer Associates, USA.
Hill, M.O. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54: 427-432.
Hill, M.O. & Gauch, H.G. 1980. Detrended correspondence analysis: an improved ordination technique. Vegetatio 42: 47-58.
Jurasinsky, G., Retzer, V., Beierkuhnlein, C. 2009. Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity. Oecologia 159:15–26.
Kent, M. 2011. Vegetation Description and Data Analysis: A Practical Approach, 2nd Edition. Wiley-Blackwell, 428 pp.
Legendre, P. & Legendre, L. 1998. Numerical Ecology. Second English edition. Developments in Environmental Modelling 20, Elsevier.
Legendre, P. & Legendre, L. 2012. Numerical Ecology. Third English edition. Elsevier Science BV, Amsterdam.
Legendre, P. & Gallagher, E.D. 2001. Ecologically meaningful transformation for ordination of species data. Oecologia, 129: 271-280. pdf
Legendre, P. & De Cáceres, M. 2013. Beta diversity as the variance of community data: dissimilarity coefficients and partitioning. 16: 951-963. pdf
Lepš, J. & Šmilauer, P. 2003. Multivariate Analysis of Ecological Data using CANOCO. Cambridge Press. Supplementary materials
McCune, B. 1994. Improving community analysis with the Beals smoothing function. Ecoscience 1: 82-86.
McCune, B. 1997. Influence of noisy environmental data on canonical correspondence analysis. Ecology 78: 2617-2623. pdf
McCune, B. & Keon, D. 2002. Equations for potential annual direct incident radiation and heat load. Journal of Vegetation Science 13: 603-606. pdf
McCune, B. & Grace, J.B. 2002. Analysis of Ecological Communities. MjM Software, Gleneden Beach, Oregon, USA.
Mueller-Dombois, D. & Ellenberg, H. 1974. Aims and Methods of Vegetation Ecology. John Wiley & Sons.
Murtagh, F. & Legendre, P. 2014. Ward’s hierarchical agglomerative clustering method: which algorithms implement ward’s criterion? Journal of Classification 31: 274-295. pdf
Oksanen, J. (2015) Multivariate Analysis of Ecological Communities in R: vegan tutorial. pdf
Peres-Neto, P.R., Jackson, D.A. & Somers, K.M. 2005. How many principal components? Stopping rules for determining the number of non-trivial axes revisited. Computational Statistics & Data Analysis 49:974–997.pdf
Peres-Neto, P.R., Legendre, P., Dray, S. & Borcard, D. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87:2614–2625. pdf
Smith, T.W. & Lundholm, J.T. 2010. Variation partitioning as a tool to distinguish between niche and neutral processes. Ecography 33: 648-655. pdf
Šmilauer, P. & Lepš, J. 2014. Multivariate Analysis of Ecological Data using Canoco 5. Second Edition. Cambridge University Press, Cambridge, UK.
ter Braak, C.J.F. 1986. Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology 67: 1167-1179. pdf
ter Braak, C.J.F. & Šmilauer, P. 2002. CANOCO Reference Manual and CanodDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5.). Microcomputer Power, New York.
ter Braak, C.J.F. & Šmilauer, P. 2012. CANOCO Reference Manual and User's Guide: Software for Ordination (version 5.0). Microcomputer Power (Ithaca, NY, USA), 496 pp.
Tukey, J.W. 1980. We need both exploratory and confirmatory. The American Statistician, 34, 23-25. pdf
Whittaker, R.H. 1960. Vegetation of the Siskiyou Mountains, Oregon and California. Ecological Monographs 30: 279-338. pdf
Wilson, J.B. 2012. Species presence/absence sometimes represents a plant community as well as species abundances do, or better. Journal of Vegetation Science 23: 1013–1023. https://doi.org/10.1111/j.1654-1103.2012.01430.x
Zelený D. 2018. Which results of the standard test for community weighted mean approach are too optimistic? Journal of Vegetation Science 29: 953-966. https://doi.org/10.1111/jvs.12688, read-only pdf
Zuur A.F., Ieno E.N. & Smith G.M. 2007. Analysing ecological data. New York. Springer.
en/references.txt · Last modified: 2022/04/15 03:26 by David Zelený