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Analysis of community ecology data in R
David Zelený
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data
Sidebar
Introduction
Introduction
About R program
Links to other materials
Courses & workshops
Theory, R functions & Examples
Overview of analyses
Data types and import into R
Preparation of data for analysis
Sampling design
Ecological resemblance
Ordination analysis
PCA & tb-PCA
CA & DCA
PCoA & NMDS
RDA, tb-RDA, CCA & db-RDA
Ordination diagrams
Supplementary variables
Explained variation
Permutation test
Variable selection
Variation partitioning
Numerical classification
Cluster analysis
TWINSPAN
K-means
Evaluation of classification
Diversity analysis
Diversity indices
Comparing diversity
Species attributes
CWM & fourth corner
CWM-RDA & RLQ
References
Data & Functions
Example data
Functions from NumEcol with R
Custom-built functions
Others
Common confusions & mistakes
Animation of ordination
Artefacts in ordinations
Logo (of heart)
Permalink:
davidzeleny.net/anadat-r
Author:
David Zelený
en:data
Table of Contents
Example data
Vegetation data
Zoological data
Simulated data
Other
Example data
Vegetation data
Alpine plant communities in Aravo, France (Choler 2005, Dray et al. 2014)
Barley field weed community dataset (Pyšek & Lepš)
Barro Colorado Island forest permanent plot dataset (Condit et al.)
Bryce Canyon dataset (Dave Roberts)
Carpathians wetlands dataset (Hájek, Hekera & Hájková)
Danube meadow dataset (Ellenberg 1956, Mueller-Dombois & Ellenberg 1974)
Dune meadow dataset (Jongman et al. 1995 from Batterink & Wijffels 1983)
Forest plots along elevation gradient in Taiwan (MQU dataset, Li & Zelený)
Gentry's forest transects (Alwin H. Gentry)
Lalashan transect: forest vegetation plot data (VegLab; Zelený, Li, Shen, Chen et al.)
Nanjenshan forest dynamics plot (Sun & Hsieh)
Němčičky forest permanent plot (understory species; Chudomelová, Zelený & Li)
Ohrazeni dataset - experimental data from wet meadow (Jan Šuspa Lepš)
Seedlings dataset - experiment with randomized complete blocks (Špačková & Lepš)
Taiwan GBIF data (Liao & Chen)
Taiwan forest - seven 1-ha plots (Zelený & Li, unpublished)
Třebíč grasslands dataset (David Zelený)
Vltava river valley dataset (David Zelený)
Zoological data
Bird communities along elevation gradient in Yushan Mountain, Taiwan (Ding)
Carabid beetles dataset from boreal forest in Finland (Niemelä et al.)
Carabid beetles from Canada (Bergeron, Blanchet)
Coral reefs dataset, Indonesia (Warwick, Anderson)
Doubs river fish dataset (Verneaux)
Molluscs in spring-fens (molluscs, vegetation and water chemistry) (Horsák & Hájek)
Oribatid mite dataset (Borcard et al.)
Simulated data
Simulated ecological data (Minchin 1987, Fridley et al. 2007)
Spatially structured simulated community data (Smith & Lundholm 2010)
Other
Cookies vs pastries vs pizza (everest4ever)
Normal pig
Rothkopf's experiment with Morse codes (Rothkopf)
What's Cooking? (Kaggle)
en/data.txt
· Last modified: 2023/05/21 14:00 by
David Zelený
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